dump

LogSeq/pages/Collective Effects.md

@@ -6,5 +6,10 @@
 	- ((6599806e-ba8f-4549-9c88-f99940e33e96)) (for longitudinal description see s41598-021-87041-0_matrix_model_for_collective_phenomena_in_ebeams_long_phasespace.pdf eq.30
 - micro-bunching
 - übergangsstrahlung, bremsstrahlung?
+- ion clouds? ((65a96d09-fdbf-4b00-9435-16b8b9aba523))
+- ((65a96d3b-bcd4-4aa2-a3d5-a3da97bf62fb))
+-
 - TODO:
-- summarize which effects could be relevant, then see which are considered at the moment for medical linacs, especiallty flash/microbeams, and then it is clear which need to be considered, thats what I plan to do....
+- summarize which effects could be relevant, then see which are considered at the moment for medical linacs, especiallty flash/microbeams, and then it is clear which need to be considered, thats what I plan to do....
+- ![DampingRings-Lecture9_electron-ion_cloud.pdf](../assets/DampingRings-Lecture9_electron-ion_cloud_1705602269851_0.pdf)
+-

emmy_noether/library.bib

@@ -0,0 +1,143 @@
+@Article{Borras_2015,
+  author    = {Borras, Josep M. and Lievens, Yolande and Grau, Cai},
+  journal   = {Acta Oncologica},
+  title     = {The need for radiotherapy in Europe in 2020: Not only data but also a cancer plan},
+  year      = {2015},
+  issn      = {1651-226X},
+  month     = jul,
+  number    = {9},
+  pages     = {1268--1274},
+  volume    = {54},
+  doi       = {10.3109/0284186X.2015.1062139},
+  publisher = {Informa UK Limited},
+}
+
+@Article{Feist1989,
+  author   = {H Feist and U Muller},
+  journal  = {Physics in Medicine & Biology},
+  title    = {Measurement of the total stopping power of 5.3 MeV electrons in polystyrene by means of electron beam absorption in ferrous sulphate solution},
+  year     = {1989},
+  month    = {dec},
+  number   = {12},
+  pages    = {1863},
+  volume   = {34},
+  abstract = {Describes how an experimental arrangement for the calibration of Fricke solution in terms of absorbed dose to water can be utilised to determine total, i.e. collisional and radiative, mass stopping power of high-energy electrons. As a first result the measurement of the total mass stopping power of polystyrene at about 5.3 MeV kinetic electron energy is presented in detail. Comparison of the obtained value with the corresponding result of recent theoretical computations shows agreement within the measurement uncertainty of about 1.2% (SD).},
+  doi      = {10.1088/0031-9155/34/12/009},
+  url      = {https://dx.doi.org/10.1088/0031-9155/34/12/009},
+}
+
+@Article{Seuntjens2009,
+  author   = {Jan Seuntjens and Simon Duane},
+  journal  = {Metrologia},
+  title    = {Photon absorbed dose standards},
+  year     = {2009},
+  month    = {mar},
+  number   = {2},
+  pages    = {S39},
+  volume   = {46},
+  abstract = {In this review the current status of absorbed dose to water standards for high-energy photon beams (60Co—50 MV nominal accelerating potential) is discussed. The review is focused on calorimeter-based absorbed dose standards for photon radiation therapy calibrations with typical dose rates of a few gray per minute. In addition, two alternative types of absorbed dose standards are also discussed. The overall uncertainty on measured dose to water in static reference fields is nowadays on the order of 0.4% to 0.5%. The components contributing to the uncertainty budgets are discussed. The discussed absorbed dose to water standards are expected to continue to have their place not only in the dissemination of absorbed dose to water but also in the determination of beam quality conversion factors essential in reference dosimetry in high-energy photon beams.},
+  doi      = {10.1088/0026-1394/46/2/S04},
+  url      = {https://dx.doi.org/10.1088/0026-1394/46/2/S04},
+}
+
+@Article{Atkinson2023,
+  author    = {Atkinson, Jake and Bezak, Eva and Le, Hien and Kempson, Ivan},
+  journal   = {Physical and Engineering Sciences in Medicine},
+  title     = {The current status of FLASH particle therapy: a systematic review},
+  year      = {2023},
+  issn      = {2662-4737},
+  month     = may,
+  number    = {2},
+  pages     = {529--560},
+  volume    = {46},
+  doi       = {10.1007/s13246-023-01266-z},
+  file      = {:Atkinson2023 - The current status of FLASH particle therapy_ a systematic review.pdf:PDF},
+  publisher = {Springer Science and Business Media LLC},
+}
+
+@PhdThesis{,
+  author = {Elise Konradsson},
+  school = {Lund University},
+  title  = {Radiotherapy in a FLASH: Towards clinical translation of ultra-high dose rate electron therapy},
+  year   = {2023},
+}
+
+@Article{Petersson2017,
+  author    = {Petersson, Kristoffer and Jaccard, Maud and Germond, Jean‐François and Buchillier, Thierry and Bochud, François and Bourhis, Jean and Vozenin, Marie‐Catherine and Bailat, Claude},
+  journal   = {Medical Physics},
+  title     = {High dose‐per‐pulse electron beam dosimetry — A model to correct for the ion recombination in the Advanced Markus ionization chamber},
+  year      = {2017},
+  issn      = {2473-4209},
+  month     = feb,
+  number    = {3},
+  pages     = {1157--1167},
+  volume    = {44},
+  doi       = {10.1002/mp.12111},
+  publisher = {Wiley},
+}
+
+@Article{Kranzer2022,
+  author    = {Kranzer, R and Schüller, A and Bourgouin, A and Hackel, T and Poppinga, D and Lapp, M and Looe, H K and Poppe, B},
+  journal   = {Physics in Medicine & Biology},
+  title     = {Response of diamond detectors in ultra-high dose-per-pulse electron beams for dosimetry at FLASH radiotherapy},
+  year      = {2022},
+  issn      = {1361-6560},
+  month     = mar,
+  number    = {7},
+  pages     = {075002},
+  volume    = {67},
+  doi       = {10.1088/1361-6560/ac594e},
+  publisher = {IOP Publishing},
+}
+
+@Article{Faillace2022,
+  author    = {Faillace, L. and Alesini, D. and Bisogni, G. and Bosco, F. and Carillo, M. and Cirrone, P. and Cuttone, G. and De Arcangelis, D. and De Gregorio, A. and Di Martino, F. and Favaudon, V. and Ficcadenti, L. and Francescone, D. and Franciosini, G. and Gallo, A. and Heinrich, S. and Migliorati, M. and Mostacci, A. and Palumbo, L. and Patera, V. and Patriarca, A. and Pensavalle, J. and Perondi, F. and Remetti, R. and Sarti, A. and Spataro, B. and Torrisi, G. and Vannozzi, A. and Giuliano, L.},
+  journal   = {Physica Medica},
+  title     = {Perspectives in linear accelerator for FLASH VHEE: Study of a compact C-band system},
+  year      = {2022},
+  issn      = {1120-1797},
+  month     = dec,
+  pages     = {149--159},
+  volume    = {104},
+  doi       = {10.1016/j.ejmp.2022.10.018},
+  publisher = {Elsevier BV},
+}
+
+@Article{Schueller2020,
+  author    = {Schüller, Andreas and Heinrich, Sophie and Fouillade, Charles and Subiel, Anna and De Marzi, Ludovic and Romano, Francesco and Peier, Peter and Trachsel, Maria and Fleta, Celeste and Kranzer, Rafael and Caresana, Marco and Salvador, Samuel and Busold, Simon and Schönfeld, Andreas and McEwen, Malcolm and Gomez, Faustino and Solc, Jaroslav and Bailat, Claude and Linhart, Vladimir and Jakubek, Jan and Pawelke, Jörg and Borghesi, Marco and Kapsch, Ralf-Peter and Knyziak, Adrian and Boso, Alberto and Olsovcova, Veronika and Kottler, Christian and Poppinga, Daniela and Ambrozova, Iva and Schmitzer, Claus-Stefan and Rossomme, Severine and Vozenin, Marie-Catherine},
+  journal   = {Physica Medica},
+  title     = {The European Joint Research Project UHDpulse – Metrology for advanced radiotherapy using particle beams with ultra-high pulse dose rates},
+  year      = {2020},
+  issn      = {1120-1797},
+  month     = dec,
+  pages     = {134--150},
+  volume    = {80},
+  doi       = {10.1016/j.ejmp.2020.09.020},
+  publisher = {Elsevier BV},
+}
+
+@Article{Fukunaga2021,
+  author    = {Fukunaga, H. and Butterworth, K.T. and McMahon, S.J. and Prise, K.M.},
+  journal   = {Clinical Oncology},
+  title     = {A Brief Overview of the Preclinical and Clinical Radiobiology of Microbeam Radiotherapy},
+  year      = {2021},
+  issn      = {0936-6555},
+  month     = nov,
+  number    = {11},
+  pages     = {705--712},
+  volume    = {33},
+  doi       = {10.1016/j.clon.2021.08.011},
+  publisher = {Elsevier BV},
+}
+
+@Online{HDFGroup19972019,
+  author        = {{The HDF Group}},
+  bdsk-url-1    = {https://www.hdfgroup.org/HDF5/},
+  date-added    = {2019-10-29 20:36:49 +0100},
+  date-modified = {2019-10-29 21:07:12 +0100},
+  title         = {{Hierarchical Data Format, version 5}},
+  url           = {https://www.hdfgroup.org/HDF5/},
+  year          = {1997-2019},
+}
+
+@Comment{jabref-meta: databaseType:bibtex;}

plots/gantt.tex

@@ -0,0 +1,195 @@
+% \documentclass[4paper,11pt]{article}
+\documentclass{standalone}
+\usepackage{tikz}
+\usepackage{xcolor}
+\definecolor{phd1}{rgb}{0.125490196078431,0.290196078431373,0.529411764705882}     % phd1
+% \definecolor{master2}{rgb}{0.96078431372549,0.474509803921569,0}                   % master2
+\definecolor{postdoc}{rgb}{0.305882352941176,0.603921568627451,0.0235294117647059}  % postdoc
+\definecolor{phd2}{rgb}{0.6431372549019608, 0.0, 0.0}                            % phd2
+\definecolor{master1}{rgb}{0.4588235294117647, 0.3137254901960784, 0.4823529411764706}  % Purple 
+\definecolor{leader}{HTML}{babdb6}
+% \definecolor{leader}{rgb}{0.480392156862745,0.503921568627451,0.511764705882353}  % grey
+    % \definecolor{leader}{rgb}{0.180392156862745,0.203921568627451,0.211764705882353}    
+    % \definecolor{leader}{rgb}{0.447058823529412,0.623529411764706,0.811764705882353}    
+    \definecolor{master2}{rgb}{0.807843137254902,0.36078431372549,0}
+    % \definecolor{leader}{rgb}{0.541176470588235,0.886274509803922,0.203921568627451}    
+    % \definecolor{color9}{rgb}{0.937254901960784,0.16078431372549,0.16078431372549}    
+    % \definecolor{color10}{rgb}{0.67843137254902,0.498039215686275,0.658823529411765}    
+    % \definecolor{color11}{rgb}{0.125490196078431,0.290196078431373,0.529411764705882}    
+    % \definecolor{color12}{rgb}{0.96078431372549,0.474509803921569,0}    
+    % \definecolor{leader}{rgb}{0.305882352941176,0.603921568627451,0.0235294117647059}    
+    % \definecolor{leader}{rgb}{0.6431372549019608, 0.0, 0.0}    
+    % \definecolor{leader}{rgb}{0.4588235294117647, 0.3137254901960784, 0.4823529411764706}    
+    % \definecolor{leader}{rgb}{0.180392156862745,0.203921568627451,0.211764705882353}
+
+\usetikzlibrary{patterns.meta}
+
+\usepackage{pgfgantt}
+
+\usepackage{helvet}
+\renewcommand{\familydefault}{\sfdefault}
+
+\makeatletter
+\newlength\pgf@pat@distance % or defined by the more portable \newdimen
+
+% based on pattern `Lines`, defined in pgflibrarypatterns.meta.code.tex
+\pgfdeclarepattern{
+  name=Stripes,
+  type=colored,
+  parameters={
+      \pgfkeysvalueof{/pgf/pattern keys/distance},
+      \pgfkeysvalueof{/pgf/pattern keys/angle},
+      \pgfkeysvalueof{/pgf/pattern keys/xshift},
+      \pgfkeysvalueof{/pgf/pattern keys/yshift},
+      \pgfkeysvalueof{/pgf/pattern keys/color series},
+  },
+  bottom left={%
+    \pgfpoint{-.5*\pgf@pat@distance}{-.5*\pgf@pat@distance}},
+  top right={%
+    \pgfpoint{.5*\pgf@pat@distance}{.5*\pgf@pat@distance}},
+  tile size={%
+    \pgfpoint
+      {\pgfkeysvalueof{/pgf/pattern keys/distance}}%
+      {\pgfkeysvalueof{/pgf/pattern keys/distance}}},
+  tile transformation={%
+    \pgftransformshift{%
+      \pgfpoint
+        {\pgfkeysvalueof{/pgf/pattern keys/xshift}}%
+        {\pgfkeysvalueof{/pgf/pattern keys/yshift}}}%
+    \pgftransformrotate{\pgfkeysvalueof{/pgf/pattern keys/angle}}},
+  defaults={
+    distance/.initial=6pt,
+    angle/.initial=0,
+    xshift/.initial=0pt,
+    yshift/.initial=0pt,
+    color series/.initial={phd2,postdoc,phd1},
+  },
+  code={%
+    \pgf@pat@colorseries@parse
+    % set line width
+    \pgfsetlinewidth{\pgf@pat@distance/\pgfutil@tempcnta}%
+    % \pgfutil@tempdima holds the y-coord of a stripe
+    \pgfutil@tempdima=\dimexpr-.5\pgf@pat@distance+.5\pgflinewidth\relax
+    % draw stripes
+    \pgfutil@tempcnta=0
+    \pgfutil@for\pgf@pat@temp:=\pgf@pat@colorseries\do{%
+      \ifx\pgf@pat@temp\pgfutil@empty
+      \else
+        \pgfsetstrokecolor{\pgf@pat@temp}%
+        \pgfpathmoveto{%
+          \pgfpoint{-.5*\pgf@pat@distance}{\pgfutil@tempdima}}%
+        \pgfpathlineto{%
+          \pgfpoint{ .5*\pgf@pat@distance}{\pgfutil@tempdima}}%
+        \pgfusepath{stroke}%
+        \advance\pgfutil@tempdima\pgflinewidth
+      \fi
+    }%
+  },
+  set up code={%
+    \pgfmathsetlength{\pgf@pat@distance}{\pgfkeysvalueof{/pgf/pattern keys/distance}}%
+  }
+}
+
+% util
+\def\pgf@pat@colorseries@parse{%
+  % prepare \pgf@pat@colorseries and store its length in \pgfutil@tempcnta
+  \let\pgf@pat@colorseries\pgfutil@empty
+  \pgfutil@tempcnta=0
+  \pgfkeysgetvalue{/pgf/pattern keys/color series}{\pgf@pat@colorseries@temp}%
+  \pgfutil@for\pgf@temp:=\pgf@pat@colorseries@temp\do{%
+    % strip spaces around color names and skip empty items
+    % the total effect is to convert `phd2, phd1,, cyan` to `phd2,phd1,cyan`
+    \expandafter\pgfkeys@spdef\expandafter\pgf@temp\expandafter{\pgf@temp}%
+    \ifx\pgf@temp\pgfutil@empty
+    \else
+      \edef\pgf@pat@colorseries{%
+        \unexpanded\expandafter{\pgf@pat@colorseries},%
+        \unexpanded\expandafter{\pgf@temp}}%
+      \advance\pgfutil@tempcnta by 1
+    \fi
+  }%
+  % ensure the resulting color series is never empty
+  \ifnum\pgfutil@tempcnta=0
+    \def\pgf@pat@colorseries{phd2,postdoc,phd1}%
+  \fi
+}
+\makeatother
+
+\begin{document}
+% \begin{tikzpicture}
+%   \fill[pattern={Lines[angle=30]}]
+%     (0,0) rectangle +(2,1);
+%
+%   \fill[pattern={Stripes[angle=30]}]
+%     (0,-1.5) rectangle +(2,1);
+%   \fill[pattern={Stripes[angle=30, color series={leader, darkleader}]}]
+%     (3,-1.5) rectangle +(2,1);
+%   \fill[pattern={Stripes[angle=30, distance=12pt, color series={cyan, magenta, master1, black}]}]
+%     (6,-1.5) rectangle +(2,1);
+%   \fill[pattern={Stripes[angle=30, distance=12pt, color series={cyan!50!black!50}]}]
+%     (9,-1.5) rectangle +(2,1);
+% \end{tikzpicture}
+% \bigskip
+
+% helper option
+\pgfqkeys{/pgfgantt}{
+  bar pattern/.style={
+    bar/.append style={
+      pattern={Stripes[angle=45,distance=15pt,color series={#1}]}
+    }
+  },
+  bar pattern/.default={phd2,postdoc,phd1},
+}
+% \newpage
+% \vspace{-4cm}
+\noindent
+\begin{ganttchart}[expand chart=17cm,
+            vgrid={*2{draw=none},{dotted}},
+            y unit title=0.6cm,
+            y unit chart=0.5cm,
+                                title height=1,
+                bar height=0.6]{1}{36}
+  \gantttitle[]{Year 1}{6}
+  \gantttitle[]{Year 2}{6}
+  \gantttitle[]{Year 3}{6}
+  \gantttitle[]{Year 4}{6}
+  \gantttitle[]{Year 5}{6}
+  \gantttitle[]{Year 6}{6}\\
+%   ich leader, postdoc grün, phd1 phd1, phd2 phd2, master 1 master1, master2 master2
+
+  \ganttbar[bar pattern={leader}]{WP A1a}{1}{6}                \\
+  \ganttbar[bar pattern={leader}]{WP A1b}{1}{6}\ganttbar[bar pattern={phd1}]{WP A1b}{7}{12}  \\
+  \ganttbar[bar pattern={leader}]{WP A2a}{1}{6} \ganttbar[bar pattern={postdoc}]{WP A2a}{7}{9} \\
+  \ganttbar[bar pattern={phd1}]{WP A2b}{4}{15}                \\
+  \ganttbar[bar pattern={leader}]{WP A2c}{4}{6}   \ganttbar[bar pattern={leader,postdoc}]{WP A2c}{7}{18} \\
+  \ganttbar[bar pattern={postdoc}]{WP A3\,\,\,}{7}{18}
+    \ganttnewline[ black]
+  \ganttbar[bar pattern={phd1}]{WP B1a}{1}{12}                \\
+  \ganttbar[bar pattern={leader,phd1}]{WP B1b}{10}{18}                \\
+%   \ganttbar[bar pattern={leader,phd1}]{WP B1c}{10}{18}                \\
+  \ganttbar[bar pattern={phd1}]{WP B2a}{1}{12}                \\
+  \ganttbar[bar pattern={leader}]{WP B2b}{10}{18}                \\
+  \ganttbar[bar pattern={master1}]{WP B2c}{16}{21}                \\
+  \ganttbar[bar pattern={leader, master1}]{WP B3a}{16}{21}
+    \ganttnewline[ black]
+  \ganttbar[bar pattern={leader}]{WP C1a}{13}{24}                \\
+  \ganttbar[bar pattern={master1}]{WP C1b}{16}{21} \ganttbar[bar pattern={leader}]{WP C1b}{22}{27}  \\
+  \ganttbar[bar pattern={leader}]{WP C2a}{16}{27}              \\
+  \ganttbar[bar pattern={master1}]{WP C2b}{19}{21} \ganttbar[bar pattern={leader}]{WP C2b}{22}{27}   \\
+  \ganttbar[bar pattern={phd2}]{WP C3a}{16}{30}                \\
+  \ganttbar[bar pattern={phd2, leader}]{WP C3b}{25}{30}\ganttbar[bar pattern={phd2,master2}]{WP C3b}{31}{33}\ganttbar[bar pattern={master2}]{WP C3b}{34}{36}              \\
+  \ganttbar[bar pattern={master2, phd2}]{WP C3c}{31}{33}    \ganttbar[bar pattern={master2,leader}]{WP C3c}{34}{36}
+  \ganttnewline[ black]
+  \ganttbar[bar pattern={leader}]{Group leader}{1}{36}           \\
+  \ganttbar[bar pattern={phd1}]{PhD 1}{1}{18}           \\
+  \ganttbar[bar pattern={postdoc}]{Postdoc}{7}{18}           \\
+  \ganttbar[bar pattern={phd2}]{PhD 2}{16}{33}           \\
+  \ganttbar[bar pattern={master1}]{Master 1}{16}{21}           \\
+  \ganttbar[bar pattern={master2}]{Master 2}{31}{36}
+%
+%
+%   \ganttbar[bar pattern={leader, postdoc}]{WP2}{4}{15} \ganttbar[bar pattern={postdoc}]{WP2}{15}{30}  \\
+%   \ganttbar[bar pattern={phd1, phd2}]{WP3}{10}{30}   \\
+%   \ganttbar[bar pattern={phd2}]{WP4}{20}{45}
+\end{ganttchart}
+\end{document}

plots/mindmap_3_optimized.alz

@@ -11,9 +11,46 @@
   <corner-radius>5000</corner-radius>
  </style>
  <graph>
-  <node h="75000" i="23" x="-568000" y="120000" w="212000">
-   <text>further applications
-e.g. LPA drive beam?</text>
+  <node h="75000" i="24" x="504000" y="-328000" w="200000">
+   <text>improved general 
+understanding</text>
+   <color r="255" b="255" g="255"/>
+   <text-color r="17" b="17" g="17"/>
+  </node>
+  <node h="75000" i="1" x="184000" y="-328000" w="223000">
+   <text>collective effects 
+through self interaction</text>
+   <color r="255" b="255" g="255"/>
+   <text-color r="0" b="0" g="0"/>
+  </node>
+  <node h="75000" i="18" x="-208000" y="-120000" w="200000">
+   <text>accelerator based
+modulation</text>
+   <color r="255" b="255" g="255"/>
+   <text-color r="17" b="17" g="17"/>
+  </node>
+  <node h="75000" i="11" x="-568000" y="-328000" w="227000">
+   <text>fast, time-resolved
+accelerator diagnostics</text>
+   <color r="255" b="255" g="255"/>
+   <text-color r="0" b="0" g="0"/>
+  </node>
+  <node h="75000" i="12" x="184000" y="120000" w="200000">
+   <text>dosimetry</text>
+   <color r="255" b="255" g="255"/>
+   <text-color r="17" b="17" g="17"/>
+  </node>
+  <node h="97000" i="0" x="-208000" y="-328000" w="211000">
+   <text>short and/or spatially 
+structured pulses
+of high intensity</text>
+   <color r="255" b="255" g="255"/>
+   <text-color r="0" b="0" g="0"/>
+  </node>
+  <node h="97000" i="22" x="-208000" y="120000" w="247000">
+   <text>pulse shape and duration
+dependence of detection
+methods</text>
    <color r="255" b="255" g="255"/>
    <text-color r="17" b="17" g="17"/>
   </node>
@@ -23,14 +60,20 @@ of tumor tissue</text>
    <color r="255" b="255" g="255"/>
    <text-color r="17" b="17" g="17"/>
   </node>
+  <node h="75000" i="23" x="-568000" y="120000" w="212000">
+   <text>further applications
+e.g. LPA drive beam?</text>
+   <color r="255" b="255" g="255"/>
+   <text-color r="17" b="17" g="17"/>
+  </node>
   <node h="75000" i="21" x="504000" y="120000" w="200000">
    <text>ion-recombination</text>
    <color r="255" b="255" g="255"/>
    <text-color r="17" b="17" g="17"/>
   </node>
   <node h="75000" i="20" x="504000" y="-120000" w="200000">
-   <text>shape/duration
-on target</text>
+   <text>pulse shape and
+duration on target</text>
    <color r="255" b="255" g="255"/>
    <text-color r="17" b="17" g="17"/>
   </node>
@@ -45,70 +88,27 @@ through matter</text>
    <color r="255" b="255" g="255"/>
    <text-color r="0" b="0" g="0"/>
   </node>
-  <node h="97000" i="22" x="-208000" y="120000" w="201000">
-   <text>detector tests:
-2D and pulse length
-dependence</text>
-   <color r="255" b="255" g="255"/>
-   <text-color r="17" b="17" g="17"/>
-  </node>
-  <node h="97000" i="0" x="-208000" y="-328000" w="251000">
-   <text>short pulses
-spatially strucutred pulses
-high intensity</text>
-   <color r="255" b="255" g="255"/>
-   <text-color r="0" b="0" g="0"/>
-  </node>
-  <node h="75000" i="12" x="184000" y="120000" w="200000">
-   <text>dosimetry</text>
-   <color r="255" b="255" g="255"/>
-   <text-color r="17" b="17" g="17"/>
-  </node>
-  <node h="75000" i="11" x="-568000" y="-328000" w="227000">
-   <text>fast, time-resolved
-accelerator diagnostics</text>
-   <color r="255" b="255" g="255"/>
-   <text-color r="0" b="0" g="0"/>
-  </node>
-  <node h="75000" i="18" x="-208000" y="-120000" w="200000">
-   <text>accelerator based
-modulation</text>
-   <color r="255" b="255" g="255"/>
-   <text-color r="17" b="17" g="17"/>
-  </node>
-  <node h="75000" i="1" x="184000" y="-328000" w="200000">
-   <text>collective effects
-self interaction</text>
-   <color r="255" b="255" g="255"/>
-   <text-color r="0" b="0" g="0"/>
-  </node>
-  <node h="75000" i="24" x="504000" y="-328000" w="200000">
-   <text>improved general 
-understanding</text>
-   <color r="255" b="255" g="255"/>
-   <text-color r="17" b="17" g="17"/>
-  </node>
-  <edge i0="21" arrow-mode="0" i1="12"/>
-  <edge i0="20" arrow-mode="0" i1="15"/>
-  <edge i0="3" arrow-mode="0" i1="0"/>
-  <edge i0="3" arrow-mode="0" i1="11" reversed="1"/>
-  <edge i0="10" arrow-mode="0" i1="20"/>
-  <edge i0="10" arrow-mode="1" i1="18"/>
-  <edge i0="22" arrow-mode="0" i1="12"/>
-  <edge i0="0" arrow-mode="1" i1="1"/>
-  <edge i0="0" arrow-mode="0" i1="10"/>
-  <edge i0="12" arrow-mode="0" i1="20"/>
-  <edge i0="12" arrow-mode="0" i1="0" reversed="1"/>
-  <edge i0="11" arrow-mode="0" i1="0" reversed="1"/>
-  <edge i0="11" arrow-mode="0" i1="22" reversed="1"/>
+  <edge i0="1" arrow-mode="0" i1="24"/>
+  <edge i0="1" arrow-mode="0" i1="10"/>
+  <edge i0="1" arrow-mode="0" i1="18"/>
+  <edge i0="1" arrow-mode="0" i1="3"/>
+  <edge i0="18" arrow-mode="0" i1="0"/>
   <edge i0="18" arrow-mode="0" i1="22"/>
   <edge i0="18" arrow-mode="0" i1="23"/>
   <edge i0="18" arrow-mode="0" i1="3" reversed="1"/>
-  <edge i0="18" arrow-mode="0" i1="0"/>
-  <edge i0="1" arrow-mode="0" i1="10"/>
-  <edge i0="1" arrow-mode="0" i1="24"/>
-  <edge i0="1" arrow-mode="0" i1="18"/>
-  <edge i0="1" arrow-mode="0" i1="3"/>
+  <edge i0="11" arrow-mode="0" i1="0" reversed="1"/>
+  <edge i0="11" arrow-mode="0" i1="22" reversed="1"/>
+  <edge i0="12" arrow-mode="0" i1="20"/>
+  <edge i0="12" arrow-mode="0" i1="0" reversed="1"/>
+  <edge i0="0" arrow-mode="0" i1="10"/>
+  <edge i0="0" arrow-mode="1" i1="1"/>
+  <edge i0="22" arrow-mode="0" i1="12"/>
+  <edge i0="21" arrow-mode="0" i1="12"/>
+  <edge i0="20" arrow-mode="0" i1="15"/>
+  <edge i0="3" arrow-mode="0" i1="11" reversed="1"/>
+  <edge i0="3" arrow-mode="0" i1="0"/>
+  <edge i0="10" arrow-mode="1" i1="18"/>
+  <edge i0="10" arrow-mode="0" i1="20"/>
  </graph>
  <metadata>
   <layout-optimizer min-edge-length="130530" aspect-ratio="2370"/>

resourcen_quellen.txt

@@ -22,3 +22,6 @@ In the KiT-RT solver, we are interested in the linear Boltzmann equation, where
 https://kit-rt.readthedocs.io/en/develop/physics.html
 https://github.com/CSMMLab/KiT-RT
 https://www.scc.kit.edu/ueberuns/rg-csmm.php
+------------------
+
+Mathsee

tips/emmynoether_template-master/.gitignore

@@ -0,0 +1,4 @@
+Arbeitsplatzzusage.pdf
+Beschreibung_des_Vorhabens.pdf
+pub_list.tex
+

tips/emmynoether_template-master/Arbeitsplatzzusage.tex

@@ -0,0 +1,121 @@
+\documentclass[a4paper,10pt,ngerman,numbers=noenddot]{scrreprt}
+\usepackage[utf8]{inputenc}
+\usepackage[ngerman]{babel}
+\usepackage{eurosym}
+\usepackage{xspace}
+
+% ==========================================
+
+\usepackage[ngerman=ngerman-x-latest]{hyphsubst}
+
+% page layout
+\usepackage[a4paper,margin=1in,bottom=3cm]{geometry}
+
+% use arial
+\usepackage{helvet}
+\renewcommand{\familydefault}{\sfdefault}
+
+% use letters for chapter numbering
+\renewcommand{\thechapter}{\Alph{chapter}}
+
+% no chapter letter in section number 
+\renewcommand*{\thesection}{\arabic{section}}
+
+% numbering down to paragraph
+\setcounter{secnumdepth}{5}
+
+\parindent 0pt
+
+\makeatletter
+\newif\ifmale
+\maletrue
+\makeatother
+
+% ============= change only the following parts ==================
+%\maletrue % for a man
+\malefalse % for a woman
+\newcommand{\firstname}{Jane\xspace}
+\newcommand{\lastname}{Doe\xspace}
+\newcommand{\institute}{Some Institute\xspace}
+\newcommand{\institutearticle}{Das\xspace}
+\newcommand{\topic}{Research topic\xspace}
+
+% ============== everything below should stay unchanged =============================
+
+
+\makeatletter
+\ifmale
+	\newcommand{\herrnfrau}{Herrn\xspace}
+	\newcommand{\seinihr}{sein\xspace}
+	\newcommand{\ersie}{er\xspace}
+	\newcommand{\ihmihr}{ihm\xspace}
+	\newcommand{\employee}{wissenschaftlicher Mitarbeiter\xspace}
+	\newcommand{\signature}{Unterschrift des antragstellenden Nachwuchsgruppenleiters}
+	\newcommand{\inending}{}
+	\newcommand{\seinesihres}{seines\xspace}
+	\newcommand{\seinenihren}{seinen\xspace}
+	\newcommand{\seinerihrer}{seiner\xspace}
+\else
+	\newcommand{\herrnfrau}{Frau\xspace}
+	\newcommand{\seinihr}{ihr\xspace}
+	\newcommand{\ersie}{sie\xspace}
+	\newcommand{\ihmihr}{ihr\xspace}
+	\newcommand{\employee}{wissenschaftliche Mitarbeiterin\xspace}
+	\newcommand{\signature}{Unterschrift der antragstellenden Nachwuchsgruppenleiterin}
+	\newcommand{\inending}{in}
+	\newcommand{\seinesihres}{ihres\xspace}
+	\newcommand{\seinenihren}{ihren\xspace}
+	\newcommand{\seinerihrer}{ihrer\xspace}
+\fi
+\makeatother
+
+\begin{document}
+\thispagestyle{empty}
+\textbf{Vertrag mit der aufnehmenden Einrichtung / Arbeitgebererklärung}\\[0.5cm]
+
+\begin{center}
+\bf
+Vertrag\\
+zwischen
+\end{center}
+
+\herrnfrau \firstname \lastname \\
+
+\begin{center}
+und\\
+\end{center}
+
+
+der aufnehmenden Einrichtung \emph{\institute} über die Rechtsstellung von \herrnfrau \lastname als Emmy Noether-Nachwuchsgruppenleiter\inending.\\
+
+\institutearticle \institute stellt \herrnfrau \lastname im Falle der Bewilligung \seinesihres Antrags auf Förderung im Rahmen des Emmy Noether-Programms durch die Deutsche Forschungsgemeinschaft (DFG) befristet für die Dauer \seinerihrer Förderung als \employee ein. Sie stellt \ihmihr für diesen Zeitraum die notwendige Grundausstattung (z. B. Laborräume, Büroräume etc.) zur Verfügung. Es gelten die an unserer Einrichtung einschlägigen Tarifvorschriften mit folgenden Maßgaben:
+
+\begin{itemize}
+\item[a)]	Die Arbeitspflicht von \herrnfrau \lastname ist beschränkt auf \seinihr von der DFG gefördertes Forschungsvorhaben \emph{\topic}, und damit unmittelbar zu\-sammen\-hängende wissenschaftliche Dienstleistungen.
+\item[b)]	Die aufnehmende Institution nimmt nicht durch dienstliche Anordnungen Einfluss auf die selb\-ständige Bearbeitung des genannten Forschungsvorhabens.
+\end{itemize}
+
+Der vorstehende Passus ist notwendiger Bestandteil der Arbeitgebererklärung.
+Die folgenden Vereinbarungen unter c) und d) sind fakultativ und stellen keine zwingende Voraussetzung für die Antragstellung im Emmy Noether-Programm dar. Die DFG begrüßt diese Vereinbarungen jedoch ausdrücklich.
+
+\begin{itemize}
+\item[c)]	Die aufnehmende Institution erklärt, dass \herrnfrau \lastname auf \seinenihren Wunsch Lehraufgaben im Umfang von regelmäßig zwei Semesterwochenstunden übernehmen kann. Möchte \herrnfrau \lastname Lehraufgaben übernehmen, so hat \ersie dies so rechtzeitig bei der Fakultät/dem Fachbereich anzumelden, dass eine ordnungsgemäße Planung der Lehrveranstaltungen möglich ist.
+Hat \herrnfrau \lastname den Wunsch nach einer Übernahme von Lehraufgaben angemeldet, ist \ersie zur Übernahme der Lehraufgaben in diesem Umfang verpflichtet.
+\item[d)]	Die aufnehmende Institution erklärt, dass \herrnfrau \lastname das Recht zuerkannt wird, Doktoranden zur Promotion zu führen.
+\end{itemize}
+
+Die/Der für die aufnehmende Institution Unterzeichnende bestätigt, dass die für die Unterzeichnung notwendige Befugnis vorliegt und alle notwendigen internen Abstimmungen erfolgt sind.\\[0.75cm]
+
+
+\underline{\hspace{7.5cm}}\\
+\begin{small}Ort, Datum\end{small}\\[1.2cm]
+
+
+\underline{\hspace{7.5cm}}\hspace{1cm}\underline{\hspace{7.5cm}}\\
+\parbox{7.5cm}{Unterschrift und Stempel der aufnehmenden Einrichtung}\hspace{1cm}\parbox{7.5cm}{\signature}\\[0.75cm]
+
+\underline{\hspace{7.5cm}}\\
+\parbox{7.5cm}{Name und Funktion des/der für die
+aufnehmende Institution Unterzeichnenden}
+
+\end{document}

tips/emmynoether_template-master/Beschreibung_des_Vorhabens.aux

@@ -0,0 +1,38 @@
+\relax 
+\providecommand\hyper@newdestlabel[2]{}
+\providecommand*\new@tpo@label[2]{}
+\providecommand\babel@aux[2]{}
+\@nameuse{bbl@beforestart}
+\providecommand\HyperFirstAtBeginDocument{\AtBeginDocument}
+\HyperFirstAtBeginDocument{\ifx\hyper@anchor\@undefined
+\global\let\oldcontentsline\contentsline
+\gdef\contentsline#1#2#3#4{\oldcontentsline{#1}{#2}{#3}}
+\global\let\oldnewlabel\newlabel
+\gdef\newlabel#1#2{\newlabelxx{#1}#2}
+\gdef\newlabelxx#1#2#3#4#5#6{\oldnewlabel{#1}{{#2}{#3}}}
+\AtEndDocument{\ifx\hyper@anchor\@undefined
+\let\contentsline\oldcontentsline
+\let\newlabel\oldnewlabel
+\fi}
+\fi}
+\global\let\hyper@last\relax 
+\gdef\HyperFirstAtBeginDocument#1{#1}
+\providecommand\HyField@AuxAddToFields[1]{}
+\providecommand\HyField@AuxAddToCoFields[2]{}
+\providecommand\BKM@entry[2]{}
+\BKM@entry{id=1,dest={636861707465722E32},srcline={14}}{5C3337365C3337375C303030505C303030725C3030306F5C3030306A5C303030655C303030635C303030745C3030305C3034305C303030445C303030655C303030735C303030635C303030725C303030695C303030705C303030745C303030695C3030306F5C3030306E}
+\BKM@entry{id=2,dest={73656374696F6E2E322E31},srcline={18}}{5C3337365C3337375C303030535C303030745C303030615C303030745C303030655C3030305C3034305C3030306F5C303030665C3030305C3034305C303030745C303030685C303030655C3030305C3034305C303030615C303030725C303030745C3030305C3034305C303030615C3030306E5C303030645C3030305C3034305C303030705C303030725C303030655C3030306C5C303030695C3030306D5C303030695C3030306E5C303030615C303030725C303030795C3030305C3034305C303030775C3030306F5C303030725C3030306B}
+\citation{1973A&A....24..337S}
+\babel@aux{english}{}
+\@writefile{toc}{\contentsline {chapter}{\numberline {B}Project Description}{1}{chapter.2}\protected@file@percent }
+\@writefile{lof}{\addvspace {10\p@ }}
+\@writefile{lot}{\addvspace {10\p@ }}
+\@writefile{toc}{\contentsline {section}{\numberline {1}State of the art and preliminary work}{1}{section.2.1}\protected@file@percent }
+\newlabel{sec:stateofart}{{1}{1}{State of the art and preliminary work}{section.2.1}{}}
+\newlabel{sec:stateofart:intro}{{1}{1}{}{section.2.1}{}}
+\newlabel{sec:stateofart:nextsection}{{1}{1}{}{section.2.1}{}}
+\@writefile{tdo}{\contentsline {todo}{Figure: Some figure}{2}{figure.caption.1}\protected@file@percent }
+\@writefile{lof}{\contentsline {figure}{\numberline {1}{\ignorespaces \myblindtext \relax }}{2}{figure.caption.1}\protected@file@percent }
+\providecommand*\caption@xref[2]{\@setref\relax\@undefined{#1}}
+\newlabel{fig:somefigure}{{1}{2}{\myblindtext \relax }{figure.caption.1}{}}
+\BKM@entry{id=3,dest={73756273656374696F6E2E322E312E31},srcline={51}}{5C3337365C3337375C303030505C303030725C3030306F5C3030306A5C303030655C303030635C303030745C3030302D5C303030725C303030655C3030306C5C303030615C303030745C303030655C303030645C3030305C3034305C303030705C303030755C303030625C3030306C5C303030695C303030635C303030615C303030745C303030695C3030306F5C3030306E5C30303073}

tips/emmynoether_template-master/Beschreibung_des_Vorhabens.tex

@@ -0,0 +1,224 @@
+\hbadness 10000
+\documentclass[a4paper,11pt,numbers=noenddot,parskip=half-]{scrreprt}
+\input{header.tex}
+
+% ===============================================
+
+
+\begin{document}
+
+% increase chapter counter since chapter A is already done electronically
+\addtocounter{chapter}{1}
+
+% ===========================
+\chapter{Project Description}
+% ===========================
+
+% =============================================
+\section{State of the art and preliminary work}\label{sec:stateofart}
+
+
+% -----------------------------------------------------------------------------
+\subsection*{\textcolor{red}{Introduction}}\label{sec:stateofart:intro}
+% -----------------------------------------------------------------------------
+\myblindtext[2]
+
+Also cite something like \citet{1973A&A....24..337S}.
+
+
+% -----------------------------------------------------------------------------
+\subsection*{\textcolor{red}{Next Section}}\label{sec:stateofart:nextsection}
+% -----------------------------------------------------------------------------
+\myblindtext[8]
+
+\begin{figure}[ht]
+\begin{center}
+  \missingfigure[figwidth=0.7\hsize]{Some figure}
+  \caption{\myblindtext}
+  \label{fig:somefigure}
+\end{center}
+\end{figure}
+
+
+% -----------------------------------------------------------------------------
+\subsection*{\textcolor{red}{Summary: Blabla}}\label{sec:stateofart:summary}
+% -----------------------------------------------------------------------------
+\myblindtext[2]
+
+
+
+% -----------------------------------------------------------------------------
+\subsection{Project-related publications}
+% -----------------------------------------------------------------------------
+
+\subsubsection{Articles published by outlets with scientific quality assurance, book publications, and works accepted for publication but not yet published}
+Maximum of 10 references for a project duration of 5 years:\\
+\begin{enumerate}[leftmargin=1.5em,topsep=0pt,itemsep=0.0ex,partopsep=0ex,parsep=0.0ex]
+	\input{pub_list.tex}
+\end{enumerate}
+
+\subsubsection{Other publications}
+\textcolor{red}{none}
+
+\subsubsection{Patents}
+\textcolor{red}{none}
+
+% =====================================
+\section{Objectives and work programme}\label{sec:work_prog}
+% ----------------------------------------------------
+\subsection{Anticipated total duration of the project}
+\myblindtext
+
+% ---------------------
+\subsection{Objectives}\label{sec:work_prog:objectives}
+\myblindtext
+
+
+% ---------------------------------------------------------
+\subsection{Work programme incl. proposed research methods}
+% ---------------------------------------------------------
+\myblindtext[2]
+
+% ---------------------------------------------------------
+\subsubsection{\textcolor{red}{Research group leader (5 years)}}
+\paragraph*{\textcolor{red}{Year 1:}}
+\myblindtext
+\paragraph*{\textcolor{red}{Year 2:}}
+\myblindtext
+\paragraph*{\textcolor{red}{Year 3:}}
+\myblindtext
+\paragraph*{\textcolor{red}{Year 4 and 5:}}
+\myblindtext
+
+
+% ---------------------------------------------------------
+\subsubsection{\textcolor{red}{PhD student (3 years)}}\label{sec:phd}
+\paragraph*{\textcolor{red}{Year 1:}}
+\myblindtext
+\paragraph*{\textcolor{red}{Year 2:}}
+\myblindtext
+\paragraph*{\textcolor{red}{Year 3:}}
+\myblindtext
+
+% ---------------------------------------------------------
+\subsubsection{\textcolor{red}{Postdoc (5 years)}}
+\paragraph*{\textcolor{red}{Year 1:}}
+\myblindtext
+\paragraph*{\textcolor{red}{Year 2:}}
+\myblindtext
+\paragraph*{\textcolor{red}{Year 3:}}
+\myblindtext
+
+% ------------------------
+\subsection{Data handling}
+% ------------------------
+\myblindtext[2]
+
+% ----------------------------
+\subsection{Other information}
+\myblindtext
+
+% --------------------------------------------------------------------------------------------------------------
+\subsection{Descriptions of proposed investigations involving experiments on humans, human materials or animals}
+\myblindtext
+
+% ----------------------------------------------------------------------------------------------------
+\subsection{Information on scientific and financial involvement of international cooperation partners}
+\myblindtext
+
+% ====================
+\renewcommand{\bibsection}{\section{Bibliography}}
+\bibliographystyle{aa}
+\bibliography{bibliography}
+
+
+% ===============================
+\section{Requested modules/funds}
+% ----------------------------------------------------------------------------------------------------
+\subsection{\textcolor{red}{Emmy Noether Junior Research Group Leader}}
+\textcolor{red}{With this module I apply for funding for my own position as project leader under
+the Emmy Noether Programme.}
+
+% ----------------------------------------------------------------------------------------------------
+\subsection{\textcolor{red}{Basic Module}}
+% ----------------------------------------------------------------------------------------------------
+\subsubsection{\textcolor{red}{Funding for staff}}
+\paragraph{\textcolor{red}{Non-doctoral staff:}}
+\myblindtext
+
+\paragraph{\textcolor{red}{Postdoctoral staff:}}
+\myblindtext
+
+% ----------------------------------------------------------------------------------------------------
+\subsubsection{\textcolor{red}{Funding for direct project costs}}
+\myblindtext
+
+\paragraph{\textcolor{red}{Equipment up to \EUR{10 000}, software and consumables:}}
+\myblindtext
+
+\paragraph{\textcolor{red}{Travel:}}
+\myblindtext
+
+\paragraph{\textcolor{red}{Visiting researchers:}}
+\myblindtext
+
+\paragraph{\textcolor{red}{Other:}}
+\myblindtext
+
+\paragraph{\textcolor{red}{Project-related publication expenses:}}
+\myblindtext
+
+\subsubsection{\textcolor{red}{Funding for instrumentation}}
+\myblindtext
+
+% ============================
+\section{Project requirements}
+% ----------------------------------------
+\subsection{Employment status information}
+\textcolor{red}{\textbf{Doe, John:} post-doctoral fellow at XXX. Currently funded by XXX until XXX.}
+
+
+% -----------------------------------
+\subsection{First-time proposal data}
+\textcolor{red}{This is the first DFG proposal of John Doe.}
+
+% -------------------------------------------
+\subsection{Composition of the project group}
+\myblindtext
+
+% ---------------------------------------------
+\subsection{Cooperation with other researchers}
+\subsubsection{Researchers with whom you have agreed to cooperate on this project}
+\textcolor{red}{
+\begin{itemize}[leftmargin=1.1em,topsep=0pt,itemsep=0.0ex,partopsep=0ex,parsep=0ex]
+  \item Prof. Dr. X, Some Institute, Nowhere, USA
+  \item Prof. Dr. Y, Other Institute, Somewhere, Germany
+\end{itemize}
+}
+
+\subsubsection{Researchers with whom I have collaborated scientifically within the past 3 years}
+\textcolor{red}{
+\begin{itemize}[leftmargin=1.1em,topsep=0pt,itemsep=0ex,partopsep=0ex,parsep=0ex]
+  \item Prof. Dr. A, Some Institute, Nowhere, USA
+  \item Prof. Dr. B, Other Institute, Somewhere, Germany
+\end{itemize}
+}
+
+% -------------------------------
+\subsection{Scientific equipment}\label{sec:sci_equip}
+\myblindtext
+
+
+% ---------------------------------------------------------------
+\subsection{Project-relevant cooperation with commercial enterprises}
+\textcolor{red}{none}
+
+% ---------------------------------------------------------------
+
+\subsection{Project-relevant participation in commercial enterprises}
+\textcolor{red}{none}
+
+\section{Additional information}
+\myblindtext
+
+\end{document}

tips/emmynoether_template-master/LICENSE.md

@@ -0,0 +1,21 @@
+The MIT License (MIT)
+
+Copyright (c) 2015 birnstiel
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

tips/emmynoether_template-master/Makefile

@@ -0,0 +1,60 @@
+NAMES     = Beschreibung_des_Vorhabens 
+NAMES_PDF = $(NAMES:=.pdf)
+AUX_TEX   = pub_list.tex
+AUX_PDF	  = Arbeitsplatzzusage.pdf
+OTHERS    = pub_list.tex
+TEX       = pdflatex
+BIBTEX    = bibtex 
+VPATH     = figures
+OUTDIR    = tmp
+RELREF    = bibliography
+ARGS      = -interaction=nonstopmode -output-directory $(OUTDIR)
+RMSUF     = .aux .out .upa .upb .pax .log .blg Notes.bib .pdfsync .synctex.gz .bcf .run.xml -blx.bib # all un-needed extensions
+RMFILES   = texput.log bibtex.log $(OUTDIR)/bibtex.log # files that can be "cleaned"
+CWD       = $(CURDIR)
+# can be more than one BBL file
+BBL        = $(foreach N,$(NAMES),$(OUTDIR)/$N.bbl)
+
+#
+# get full path to bibliography
+#
+REF = $(realpath $(RELREF))
+
+all: others $(NAMES_PDF) 
+
+others: $(OTHERS)
+
+pub_list.tex: get_publist_from_bibcodes.py
+	./get_publist_from_bibcodes.py
+
+# create the bbl file
+%.bbl: $(REF)
+	$(TEX) $(ARGS) $(basename $(notdir $@)).tex &> /dev/null
+	$(BIBTEX) $(basename $@) &> $(OUTDIR)/bibtex.log
+	-cp $(notdir $@) $@
+
+# create the main file: depends on bbl and AUXFILES
+$(NAMES_PDF) : %.pdf: $(AUX_PDF) $(AUX_TEX) %.tex $(OUTDIR)/%.bbl
+	while ($(TEX) $(ARGS) $(@:.pdf=.tex)  &> /dev/null ; \
+		grep -q "Rerun to get" $(OUTDIR)/$(@:.pdf=.log) ) do true ; \
+	done
+	mv $(OUTDIR)/$@ .
+
+# generic pdf rule
+%.pdf: %.tex
+	while ($(TEX) $(ARGS) $< &> /dev/null ; \
+	grep -q "Rerun to get" $(OUTDIR)/$(@:.pdf=.log) ) do true ; \
+	done
+	mv $(OUTDIR)/$@ .
+	
+clean:
+	-rm -rf $(foreach n,$(NAMES),$(foreach s,$(RMSUF),$(OUTDIR)/$n$s)) &> /dev/null
+	-rm -rf $(foreach n,$(NAMES),$(foreach s,$(RMSUF),$n$s)) &> /dev/null
+	-rm -rf $(foreach s,$(RMSUF),$(foreach f,$(AUX_PDF:.pdf=),$(OUTDIR)/$f$s)) &> /dev/null
+	-rm -rf $(foreach s,$(RMSUF),$(foreach f,$(basename $(OTHERS)),$(OUTDIR)/$f$s)) &> /dev/null
+	-rm -rf $(foreach s,$(RMFILES),$s) &> /dev/null
+	-rm -rf $(foreach s,$(BBL),$(s:bbl=aux)) &> /dev/null
+	-rm -rf $(foreach s,$(BBL),$(s:bbl=blg)) &> /dev/null
+	
+clobber: clean
+	rm -rf $(AUX_PDF) $(NAMES_PDF) $(BBL) $(OTHERS) &> /dev/null

tips/emmynoether_template-master/Readme.md

@@ -0,0 +1,14 @@
+# Template for DFG Emmy Noether Grant Proposal
+*by Tilman Birnstiel*
+
+This repository contains my own personal template for an [Emmy Noether Grant](http://www.dfg.de/en/research_funding/programmes/individual/emmy_noether/) proposal, based on the 2014 procedures. Included are:
+
+- the template `tex`-files for Part B *'Beschreibung des Vorhabens'* including some auxiliary files (header, abbreviations, ...).
+- the template for the commitment letter from the host institution.
+- a python script that builds the publication list based on [NASA ADS](http://adsabs.harvard.edu) bibcodes (so it will work mainly for astronomers). To make it work, edit the script to include the bib codes for all the papers you want to list and put in your last name in order to bold-face your name.
+- A `Makefile` that should compile everything.
+
+# Disclaimer
+
+This repository is published under the [MIT license](https://raw.githubusercontent.com/birnstiel/emmynoether_template/master/LICENSE.md).
+Use it at own risk and make sure that you follow all the guidelines of future procedures, which might look different than this template. This is *not* an official template from the DFG.

tips/emmynoether_template-master/abbrev.tex

@@ -0,0 +1,47 @@
+% the list from ApJ
+\newcommand{\aj}{AJ\xspace}
+\newcommand{\apj}{ApJ\xspace}
+\newcommand{\apjl}{ApJ\xspace}
+\newcommand{\apjlett}{ApJ\xspace}
+\newcommand{\apjs}{ApJS\xspace}
+\newcommand{\apjsupp}{ApJS\xspace}
+\newcommand{\aap}{A\&A\xspace}
+\newcommand{\astap}{A\&A\xspace}
+\newcommand{\araa}{ARA\&A\xspace}
+\newcommand{\aapr}{A\&A Rev.\xspace}
+\newcommand{\aaps}{A\&AS\xspace}
+\newcommand{\mnras}{MNRAS\xspace}
+\newcommand{\pasp}{PASP\xspace}
+\newcommand{\apss}{Ap\&SS\xspace}
+\newcommand{\pasj}{PASJ\xspace}
+\newcommand{\nat}{Nature\xspace}
+\newcommand{\sci}{Science\xspace}
+\newcommand{\skytel}{S\&T\xspace}
+\newcommand{\memras}{MmRAS\xspace}
+\newcommand{\qjras}{QJRAS\xspace}
+\newcommand{\jrasc}{JRASC\xspace}
+\newcommand{\baas}{BAAS\xspace}
+\newcommand{\iauc}{IAU Circ.\xspace}
+\newcommand{\iaucirc}{IAU Circ.\xspace}
+\newcommand{\aplett}{Astrophys. Lett.\xspace}
+\newcommand{\apspr}{Astrophys. Space Phys. Res.\xspace}
+\newcommand{\bain}{Bull. Astron. Inst. Netherlands\xspace}
+\newcommand{\fcp}{Fund. Cosmic Phys.\xspace}
+\newcommand{\aipconf}{AIP Conf. Proc.\xspace}
+\newcommand{\aspconf}{ASP Conf. Ser.\xspace}
+\newcommand{\asslconf}{Ap\&SSL Conf. Ser.\xspace}
+\newcommand{\procspie}{Proc. SPIE\xspace}
+\newcommand{\maps}{MAPS\xspace}
+\newcommand{\planss}{Planet. Space Sci.\xspace}
+\newcommand{\ssr}{Space Sci. Rev.\xspace}
+\newcommand{\ao}{Appl. Opt.\xspace}
+\newcommand{\applopt}{Appl. Opt.\xspace}
+\newcommand{\solphys}{Sol. Phys.\xspace}
+\newcommand{\pra}{Phys. Rev. A\xspace}
+\newcommand{\prb}{Phys. Rev. B\xspace}
+\newcommand{\prc}{Phys. Rev. C\xspace}
+\newcommand{\prd}{Phys. Rev. D\xspace}
+\newcommand{\pre}{Phys. Rev. E\xspace}
+\newcommand{\prl}{Phys. Rev. Lett.\xspace}
+\newcommand{\rmp}{Rev. Mod. Phys.\xspace}
+% my additions

tips/emmynoether_template-master/bibliography.bib

@@ -0,0 +1,11 @@
+@ARTICLE{1973A&A....24..337S,
+   author = {{Shakura}, N.~I. and {Sunyaev}, R.~A.},
+    title = "{Black holes in binary systems. Observational appearance.}",
+  journal = {\aap},
+     year = 1973,
+   volume = 24,
+    pages = {337-355},
+   adsurl = {http://adsabs.harvard.edu/abs/1973A%26A....24..337S},
+  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+

tips/emmynoether_template-master/get_publist_from_bibcodes.py

@@ -0,0 +1,83 @@
+#!/usr/bin/env python
+"""
+Takes a list of bibcodes and gets the ADS data in a latex list of items and writes it out to a file.
+
+You can get all your bibcodes by going to this URL (replacing 'Birnstiel,+T.'
+with your name and initial):
+
+	http://adsabs.harvard.edu/cgi-bin/nph-abs_connect?author=Birnstiel,+T.&jou_pick=NO&data_type=Custom&sort=NDATE&format=%5C%25R
+	
+select those bibcodes you want and copy them into the array below.
+"""
+LASTNAME='Birnstiel'
+bibcodes = [
+	'2014ApJ...780..153B',
+	'2013Sci...340.1199V',
+	'2013A&A...550L...8B',
+	'2012A&A...545A..81P',
+	'2012A&A...544L..16W',
+	'2012A&A...540A..73W',
+	'2012A&A...539A.148B',
+	'2012A&A...538A.114P',
+	'2010A&A...516L..14B',
+	'2010A&A...513A..79B',
+	'2009A&A...503L...5B']
+import urllib2
+FILE = 'pub_list.tex'
+format = '\\\\item %\\13M: \\\\textit{%\\t}, %\\j (%\\Y) vol. %\\V, %\\p%-\\P\\.'
+bib_split = '\r\n'
+URL  = r'http://adsabs.harvard.edu/cgi-bin/nph-abs_connect?db_key=ALL&warnings=YES&version=1&bibcode=%s&nr_to_return=1000&start_nr=1&data_type=Custom&sort=NDATE&format=%s'%(urllib2.quote(bib_split.join(bibcodes)),urllib2.quote(format))
+#
+# get the data
+#
+response = urllib2.urlopen(URL)
+html = response.read()
+response.close()
+#
+# split in lines
+#
+html = html.split('\n')
+#
+# cut the header
+#
+while '\item' not in html[0]: del html[0]
+while '' in html: html.remove('')
+pubs = []
+pub  = []
+for j,i in enumerate(html):
+    if '\\item' in i:
+		#
+		# when a new publication starts
+		#
+        pubs+= [pub]
+        pub  = [i]
+    else:
+		#
+		# else: keep adding the line
+		#
+        pub += [i]
+#
+#
+#
+#
+# remove empty entries
+#
+while [] in pubs: pubs.remove([])
+#
+# write results
+#
+f = open(FILE,'w')
+# write header if necessary
+#f.write(r'\begin{supertabular}{p{\textwidth}}'+'\n')
+for pub in pubs:
+    line = ''.join(pub)
+    line = line.replace('&','\&')
+    line = line.replace(LASTNAME,'\\textbf{'+LASTNAME+'}')
+    # write line ending if necessary
+    #ending = '\\\\[-0.2cm] \n'
+    ending = '\n'
+    if 'Thesis' in line: line=line.replace(' vol.  ','')
+    f.write(line+ending)
+# write fooder if necessary
+#f.write(r'\end{supertabular}')
+f.close()

tips/emmynoether_template-master/header.tex

@@ -0,0 +1,94 @@
+\usepackage[utf8]{inputenc}
+\usepackage[english]{babel}
+\usepackage[right]{eurosym}
+\usepackage{graphicx}
+\usepackage{xspace}
+\usepackage{enumitem}
+
+\usepackage{blindtext}
+\usepackage{todonotes}
+
+\usepackage{amsmath}
+\usepackage{amssymb}
+
+\setparsizes{1em}{0.33em}{0pt plus 1fil}
+
+
+% ========= HYPERREF & Colors ===========
+\usepackage{xcolor}
+\definecolor{darkblue}{rgb}{0,0,.65}
+\definecolor{darkgreen}{rgb}{0.28,0.41,0.19}
+\usepackage[%
+  pdfauthor={Tilman Birnstiel},%
+  pdfstartview=FitH,%
+  breaklinks=true,%
+  bookmarks=true,%
+  colorlinks=true,%
+  linkcolor= darkblue,
+  anchorcolor=black,%
+  citecolor=darkgreen,
+  filecolor=black,%
+  menucolor=black,%
+  urlcolor=darkblue%
+  ]{hyperref}
+
+% ========== BIBLIOGRAPHY STUFF ============
+
+\usepackage{natbib}
+\bibpunct{(}{)}{;}{a}{,}{,}
+\input{abbrev.tex}
+\setlength{\bibsep}{0.0cm}
+% ============== SOME MACROS ===============
+
+\newcommand{\cont}{\textcolor{red}{\textbf{continue}}\xspace}
+\newcommand{\myblindtext}[1][1]{\textcolor{red}{\Blindtext[#1]}}
+
+% ==========================================
+% save space before and after section
+%###
+\usepackage{titlesec} 
+\titlespacing*{\section}      {0pt}{1.5ex}{1ex}
+\titlespacing*{\subsection}   {0pt}{1.5ex}{0.8ex}
+\titlespacing*{\subsubsection}{0pt}{1.5ex}{0.8ex}
+\titlespacing*{\paragraph}    {0pt}{1.0ex}{0.8ex}
+%###
+% ==========================================
+% change font size of captions
+\usepackage[font=small]{caption}
+
+% ==========================================
+
+%  consecutive figure numbers
+\usepackage{chngcntr}
+\counterwithout{figure}{chapter}
+
+% page layout
+\usepackage[a4paper,margin=0.8in,bottom=1in]{geometry}
+
+% use arial
+\usepackage{helvet}
+\renewcommand{\familydefault}{\sfdefault}
+
+% use letters for chapter numbering
+\renewcommand{\thechapter}{\Alph{chapter}}
+
+% no chapter letter in section number 
+\renewcommand*{\thesection}{\arabic{section}}
+
+% numbering down to paragraph
+\setcounter{secnumdepth}{5}
+
+\newcommand{\comment}[1]{\textcolor{red}{#1}}
+
+% =================== HEADER ====================
+\usepackage{fancyhdr}
+\usepackage{lastpage}
+
+\renewcommand{\headrulewidth}{.5pt}% header rule
+
+\pagestyle{fancy}
+\fancyhead{}
+\fancyhead[R]{\footnotesize page \thepage\ of \pageref*{LastPage}}
+\fancyhead[L]{\footnotesize \textcolor{red}{Jane Doe}}
+\fancyfoot{} 
+\fancyhead[C]{\textsc{Project Description}}

tips/emmynoether_template-master/tmp/.gitignore

@@ -0,0 +1,5 @@
+*.aux
+*.log
+*.bbl
+*.blg
+*.out